Every Friday ELIXIR CZ organizes webinars to explore their portfolio of tools and services. Registration is not needed: https://global.gotomeeting.com/join/508817845
Recordings are published at ELIXIR CZ YouTube channel.
2DProts database contains secondary structure 2D diagrams for proteins and protein domains. Moreover, it includes multiple 2D diagrams of protein family’s secondary structures. The 2D diagrams are generated based on a whole protein family, and consider information about the 3D arrangement of secondary structure elements. 2DProts is freely available at https://2dprots.ncbr.muni.cz and it is integrated into CATH.
21.5.: ELIXIR CZ Friday Coffee 2021 – Traveler: visualization of secondary structure of RNA
21.5.2021 at 9:30 David Hoksza from Charles University will talk about Traveler: visualisation of secondary structure of RNA molecules
Traveler is a tool for template-based visualization of RNA secondary structure. If a sufficiently close template is available, Traveler is able to generate a layout for even the largest RNA molecules in a standard orientation. Traveler can be used as a stand-alone application, but it also integrated within the RNAcentral’s R2DT pipeline. Part of the talk will be therefore dedicated to the description of the R2DT project.
28.5.: ELIXIR CZ Friday Coffee 2021 – cpPredictor: template based prediction of RNA
28.5.2021 at 9:30 Josef Pánek from Institute of Microbiology will talk about cpPredictor: template based prediction of RNA secondary structures
Cpredict is an algorithm for template-based prediction of secondary structures of RNAs. As templates, experimentally identified RNA structures are used. Reliability of predicted structures is evaluated by bootstrapping.