ELIXIR CZ Friday Coffee 2021

ELIXIR CZ každý pátek organizuje webináře, kde je možnost seznámit s jejich portfoliem nástrojů a služeb. Registrace není požadována: https://global.gotomeeting.com/join/508817845

Webová stránka akcí 

Záznam ze webinářů je k dispozici na  ELIXIR CZ YouTube channel.


7.5.2021 at 9:30 Miloš Musil from FNUSA-International Clinical Research Center will talk about FireProt: Computational tool
FireProt is a family of tools for the design and analysis of stable proteins. FireProt-web is a server for the fully automated design of stable multiple-point mutants, while FireProt-ASR helps inexperienced users with the successful utilization of ancestral sequence reconstruction. Finally, FireProt-DB is a novel database designated for the storage and maintenance of protein stability data.

14.5.2021 at 9:30 Radka Svobodová from Masaryk University will talk about 2DProts: Family-wide 2D diagrams of protein secondary structure

2DProts database contains secondary structure 2D diagrams for proteins and protein domains. Moreover, it includes multiple 2D diagrams of protein family’s secondary structures. The 2D diagrams are generated based on a whole protein family, and consider information about the 3D arrangement of secondary structure elements. 2DProts is freely available at https://2dprots.ncbr.muni.cz and it is integrated into CATH.

21.5.: ELIXIR CZ Friday Coffee 2021 – Traveler: visualization of secondary structure of RNA
21.5.2021 at 9:30 David Hoksza from Charles University will talk about Traveler: visualisation of secondary structure of RNA molecules

Traveler is a tool for template-based visualization of RNA secondary structure. If a sufficiently close template is available, Traveler is able to generate a layout for even the largest RNA molecules in a standard orientation. Traveler can be used as a stand-alone application, but it also integrated within the RNAcentral’s R2DT pipeline. Part of the talk will be therefore dedicated to the description of the R2DT project.

28.5.: ELIXIR CZ Friday Coffee 2021 – cpPredictor: template based prediction of RNA
28.5.2021 at 9:30 Josef Pánek from Institute of Microbiology will talk about cpPredictor: template based prediction of RNA secondary structures
Cpredict is an algorithm for template-based prediction of secondary structures of RNAs. As templates, experimentally identified RNA structures are used. Reliability of predicted structures is evaluated by bootstrapping.